📄️ MPUSP/snakemake-assembly-postprocessing
A Snakemake workflow for the post-processing of microbial genome assemblies.
📄️ MPUSP/snakemake-bacterial-riboseq
Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
📄️ MPUSP/snakemake-crispr-guides
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
📄️ MPUSP/snakemake-ms-proteomics
Pipeline for automatic processing and quality control of mass spectrometry data
📄️ MPUSP/snakemake-ont-bacterial-variants
A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.
📄️ MPUSP/snakemake-ont-basecalling
A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.
📄️ MPUSP/snakemake-simple-mapping
A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.